Copying audio from a quicktime with ffmpeg

I am trying to copy just the audio from a quicktime.

>"C:Program Filesffmpegbinffmpeg.exe" -y -i a.mov -vn -acodec pcm_s16le a.wav

Here is my output. Sorry for the formatting.

ffmpeg version N-66673-gf0d1b3a Copyright (c) 2000-2014 the FFmpeg developers
  built on Oct  6 2014 22:10:42 with gcc 4.9.1 (GCC)
  configuration: --enable-gpl --enable-version3 --disable-w32threads --enable-avisynth --enable-bzlib --enable-fontconfig --enable-frei0r --enable-gnutls --enable-iconv --enable-libass --enable-libbluray --enable-libbs2b --enable-libcaca --enable-libfreetype --enable-libgme --enable-libgsm --enable-libilbc --enable-libmodplug --enable-libmp3lame --enable-libopencore-amb --enable-libopencore-amrwb --enable-libopenjpeg --enable-libopus --enable-librtmp --enable-libschroedinger --enable-libsoxr --enable-libspeex --enable-libtheora --enable-libtwolame --enable-libvidstab --enable-libvo-aacenc --enable-libvo-amrwbenc --enable-libvorbis
 --enable-libvpx --enable-libwavpack --enable-libwebp --enable-libx264 --enable-libx265 --enable-libxavs --enable-libxvid --enable-zlib
  libavutil      54.  9.100 / 54.  9.100
  libavcodec     56.  3.101 / 56.  3.101
  libavformat    56.  7.104 / 56.  7.104
  libavdevice    56.  1.100 / 56.  1.100
  libavfilter     5.  1.102 /  5.  1.102
  libswscale      3.  1.100 /  3.  1.100
  libswresample   1.  1.100 /  1.  1.100
  libpostproc    53.  1.100 / 53.  1.100
Input #0, mov,mp4,m4a,3gp,3g2,mj2, from 'a.mov':
  Metadata:
    major_brand     : qt
    minor_version   : 512
    compatible_brands: qt
    encoder         : Lavf56.7.104
  Duration: 00:00:02.44, start: 0.021333, bitrate: 761 kb/s
    Stream #0:0(eng): Video: h264 (High) (avc1 / 0x31637661), yuv420p, 1280x720,
 628 kb/s, 24 fps, 24 tbr, 12288 tbn, 48 tbc (default)
    Metadata:
      handler_name    : DataHandler
      encoder         : Lavc56.3.101 libx264
    Stream #0:1(eng): Audio: aac (mp4a / 0x6134706D), 48000 Hz, stereo, fltp, 129 kb/s (default)
    Metadata:
      handler_name    : DataHandler
Output #0, wav, to 'a.wav':
  Metadata:
    major_brand     : qt
    minor_version   : 512
    compatible_brands: qt
    ISFT            : Lavf56.7.104
    Stream #0:0(eng): Audio: pcm_s16le ([1][0][0][0] / 0x0001), 48000 Hz, stereo
, s16, 1536 kb/s (default)
    Metadata:
      handler_name    : DataHandler
      encoder         : Lavc56.3.101 pcm_s16le
Stream mapping:
  Stream #0:1 -> #0:0 (aac (native) -> pcm_s16le (native))
Press [q] to stop, [?] for help
size=     460kB time=00:00:02.45 bitrate=1536.3kbits/s
video:0kB audio:460kB subtitle:0kB other streams:0kB global headers:0kB muxing o
verhead: 0.016559%

A wav file is generated. However, if you bring the wav file and the original quicktime into Pro Tools, you can see that the wav file does not match the timing in the original quicktime. The audio in the wav file is about a frame and a half late.

I tried setting the bit rate and frequency manually.

"C:Program Filesffmpegbinffmpeg.exe" -y -i a.mov -b:a 87k -ar 48000 -acodec pcm_s16le -vn a.wav



"C:Program Filesffmpegbinffmpeg.exe" -y -i a.mov -ar 48000 -acodec pcm_s16le -vn a_did_not_set_bitrate.wav

Neither command made a difference. Has anyone encountered this issue before? Any ideas on how to solve it?